The feature representation extracted from the functional connection network based on single brain map template is not sufficient to reveal complex topological differences between patient group and Normal Control (NC) group. However, the traditional multi-template-based functional brain network definitions mostly use independent templates, ignoring the potential topological association information in functional brain networks built with each template. Aiming at the above problems, a multi-level brain map template and a method of Relationship Induced Sparse (RIS) feature selection model were proposed. Firstly, an associated multi-level brain map template was defined, and the potential relationship between templates and network structure differences between groups were mined. Then, the RIS feature selection model was used to optimize the parameters and extract the differences between groups. Finally, the Support Vector Machine (SVM) method was used to construct classification model and was applied to the diagnosis of patients with depression. The experimental results on the clinical diagnosis database of depression in the First Hospital of Shanxi University show that the functional brain network based on multi-level template achieves 91.7% classification accuracy by using the RIS feature selection method, which is 3 percentage points higher than that of traditional multi-template method.